"Little known" or "Made up on the spot"?
The US motor vehicle fleet consumed 174,930 million gallons of fuel in 2006 according to http://www.infoplease.com/ipa/A0004727.html
There are 308 gallons of fuel to the ton, in crude oil (somewhat different from gasoline, but not sufficiently different to care about)
That's 567 million tons of fuel consumed by the US motor vehicle fleet per year.
There are 370 million tons of bunker fuel consumed by the entire global shipping industry per year according to http://www.futuresmag.com/2012/10/15/cleartrade-exchange-to-...
Only a tiny fraction of that industry is presently passing through the Panama Canal.
Headlines:
"Global Merchant Shipping Tonnage to Reach 12.4 Billion Metric Tons by 2015, According to New Report by Global Industry Analysts, Inc. "
"...canal traffic in 2009 reached 299.1 million tons of shipping."
The canal is much, much shorter than an average oceanic merchant shipping route, so an even lower fraction of ton-miles is spent on shipping through the canal. Transit times are on the order of 1 day (compare with a typical trip on a vessel slow steaming at 18 knots), so even if you assume they're running their engines full-blast inside the canal (they're not), this is still a tiny fraction of the above sum.
Carbon emissions, in case you weren't paying attention in chemistry class, are normally about 85% of the mass of complex hydrocarbons (nC=12n, n2H=2n, +2H=2), so these quantities are almost directly comparable. Bunker fuel is indeed nasty stuff, but their carbon emissions are not particularly unique (nor are any hydrocarbon fuel's) - they do have more subtle sulfur and particulate air pollution.