(0) Be female. Don't be born with heart defects. Don't be old. Don't have Marfan or Loeys-Dietz syndromes. (All of the unfair/can't modify factors will get lumped into recommendation #0.)
(1) Don't use tobacco or cocaine, and don't drink too much alcohol.
(2) Don't get exposed to radiation or chemotherapy.
(3) Don't have diabetes.
(4) Don't have high blood pressure.
(5) Have low levels of LDL and triglycerides.
(6) Don't eat too much. This is tightly related to #3 and #4, and reasonably related to #5.
(7) Have extremely low levels of LDL and triglycerides throughout your entire life. Having low LDL throughout your entire life reduces your risk of heart disease, even moreso than you would expect based on the LDL value alone. It seems that lifelong exposure to low LDL is more valuable than just late-life exposure to low LDL. [a]
Most of the genetic variants that we can currently interpret when accounting for risk (as opposed to the innumerable ones which we cannot yet interpret) fall into lipoprotein-related pathways. It will be interesting to learn about ones that do not, yet still confer meaningful cardiovascular risk. I don't think that we have a mechanistic explanation yet for the risk conferred by variants in the 9p21 locus, for example. [b]
I'm reasonably certain that your HDL is not particularly important (except as a poor proxy for your socioeconomic status, perhaps).[c] And omega-3 fatty acids have no visible effect when examined in the rigorous way in which we examine any other new drug. [d]
a = http://www.ncbi.nlm.nih.gov/pubmed/20579540
b = http://circgenetics.ahajournals.org/content/6/2/224.long