I do similar to manage my stack — without it, more often than not, I find myself with a "blown stack." But these days, I'm actually using physical index cards. I've given up on todo apps — even ones that provide arbitrary nesting/trees (e.g. org-mode, Worfklowy, etc.).
I've considered using a simple stickies app, but there's something about pencil and paper that I find beneficial — or at the least, comforting — and I haven't quite put my finger on it. Not sure if it's the ability to do free-form sketching, or that I can quickly physically shuffle/order/arrange the cards, or that I can jot things down without needing to be at my computer/on a mobile device — or just being able to step/look away from a screen for a bit.
I'm thinking most likely it's that whatever added functionality or benefits I would get from using an app to manage this stuff would be offset by me fiddling around with features, settings, tweaks, etc., and screwing around "evaluating" different tools.