Even if that were not the case, if the hypothesis is that GCC was compromised at some point in the past by a shadowy organization, then you have to consider the possibility that this shadowy organization also got to the other compilers. I think that is where probability steps in though; how confident are you that at least some of the compilers are still safe (or perhaps, at least compromised in conflicting ways)?
If you are able to inspect the actual contents of the program, not the output of a program that itself inspects the actual contents of the program, then this problem disappears. You have to examine the machine code without an intermediary program that could lie to you.
(Of course it is very unlikely that IDA Pro, objdump, or even 'od' is compromised in this way, but I would say this class of attack is largely hypothetical and implausible already...)
Edit:
From wikipedia: "What's worse, in Thompson's proof of concept implementation, the subverted compiler also subverted the analysis program (the disassembler), so that anyone who examined the binaries in the usual way would not actually see the real code that was running, but something else instead."