>The glib answer here is that there's really no such thing as the 2nd law when you're talking about a small number of individual fundamental particles. The statement "entropy never decreases" is actually a purely statistical claim, and it only rises to its usual level of essentially unbreakable validity when you're dealing with macroscopic numbers of particles
All the fundamental laws of physics, including the Schrodinger equation, follow the 2nd law or in other words they describe application of 2nd law to the given area of physics, i.e. they express "entropy never decreases" principle in terms of the objects of that physical area.
>"there is less "phase space" available (fewer possible momentum states)"
ie. less entropy :)
>an electron and positron are electrically attracted to each other and will naturally tend to meet up to annihilate
2 particles having negative and positive charges - less entropy than the entropy of 2 resulting neutral particles. Attraction (getting closer - increasing entropy) and annihilation (erasing the charge difference - increasing entropy) are in full compliance with, and i'd say direct manifestation of, the 2nd law :)