I've once seen a quote (can't find it on google right now) from a doctor who said something like "Trying to 'adapt' to polyphasic sleep is like trying to teach your bowel to excrete in portions of exactly 25 grams. It doesn't work that way.".
Alarm clocks are designed to scare our brains, as if we were in danger, to forcefully wake us up. I can't imagine that sort of punishment, multiple times a day, over long term.
Researching the subject, I have found the following link. Note that the Supermemo software is from the author, so there is some bias there towards using (and purchasing) the software. Other then that, the articles are interesting. http://www.supermemo.com/articles/polyphasic2010.htm