In the case of an organisation like Google, I don't see why the US government would even need the keys for Googles SSL certificates. Google have all the data they could ever want stored unencrypted anyway (or at least have the ability to decrypt). If they had any legal reason for wanting the content of my gmail account, they could just get the courts to subpoena Google for the data.
I think that's one of the motivations right there. Even if FISA generally gives the government what it wants, it's still a process that the government appears to regard as a hassle to be eliminated.
I think the second reason is that google is a sophisticated enough company that they could perhaps infer things from the data request patterns that the requesting agencies would prefer secret.
The chief issue in all this is the huge number of trusted CA that are the default in most operating systems. My install of OSX for example has 181 default certificate authorities, and any one of them could be compromised. I'd be willing to bet that a sizeable portion are under nefarious control.
Just to make a point I picked a random CA and tried to look up some information about it. Couldn't reach their site the first time, as they are lacking an A record on their domain root. I've no idea why they would be trusted, as they look sketchy as all hell — http://www.valicert.com/