skype uses "supernodes", i.e. machines with fixed ip addresses, to effect its udp hole-punching to get p2p comms links working. iirc, the architecture of skype is such that supernodes also handle the key exchange (kex) between peers, which is more than a bit dodgy imo.
the kex should occur directly between the two hosts independent of the supernode, but i recall that this has been their architecture for many years, meaning skype can eavesdrop on any chat/call they choose by manipulating the supernodes. the main change that occurred when MS bought skype was that the supernodes were moved from being presumably-arbitrary hosts with fixed ips to hosts controlled directly by MS. since MS controls the nodes where both udp hole-punching _and_ kex occur, they can trivially MITM comms.
i wouldn't be one bit surprised if skype has been owned by intel services for many years. being literally owned by MS only makes this process easier and avoids involving foreign nationals.