http://www.arm.com/products/processors/technologies/trustzon...
http://www.arm.com/products/processors/technologies/trustzon...
Whether your soc vendor forces a secure supervisor to load is up to them, and i'd be surprised if an HPC builder had trouble finding vendors to supply parts with a totally controllable boot chain.
I'm sure there are ways to obscure it, but there are just as many ways on x86 platforms, the only real difference being that you could pull the eprom and reflash it and inspect the other board components. There's also plenty of evil things you can put in a soc without relying on trustzone.
Bottom line is you have to trust your vendor. If you want a soc integrated and fab monitored by a business/state that is politically aligned with yours it is probably just a matter of paying a premium.
And Raspberry Pi probably doesn't run any secure mode hypervisor as well.