It would be interesting to put zoning issues like building height and affordable housing policy up to the voters. When the BART was being built, many SF residents organized against it, fearing the "manhattanification" of SF. I see similar attitudes today; I think a lot of SF residents are fine with the small-town "charm" and lack of big-city services, even though they are paying big-city prices.
I honestly think a lot of people in SF don't understand how much better big cities can be; there's a reason you don't see many NY transplants in the Bay. In more ways than one, the Bay Area is in a bubble.