EDIT: This would be for new installs, of course. You'd use a motherboard with only a Thunderbolt or USB 3.0 port.
EDIT: I'd love to hear the "more complicated reasons", as your other objections dont apply. In a compute cluster, you have short (within-rack) cable lengths, and the owner of the switch is the owner of the cluster so security is not an issue. Cost is a super big deal in a cluster. More expensive interconnect means buying fewer servers, and that's just dumb.