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What if the Journal asks for a transfer of copyright? Does that violate some kind of law/thing for all the previous (including the final) version of the manuscript stored on Authorea? Would the author have to take down their final-manuscript from Authorea so they can transfer the copyright to the publisher/Journal.

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hi there- by and large, authors are allowed to publish the pre-print and post-print versions of their published manuscripts (pre-print being the version right before editor proof-reading, and post-print any version following publication). Authorea articles are essentially "enriched" pre-prints so they do not interfere with the passing of the copyright to publishers.

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