Except that you now effectively have cars that are twice as long and articulated in the middle. If one half of the double-car is damaged, both have to be taken in for repair, and both have to be transported and handled as a unit.
Presumably, the previous single-car size had already been optimized for pre-toilet criteria, and changing that by a factor of two probably massively screws with at least some of those criteria. It's hard to believe that the costs savings for having half as many toilets significantly outweigh those other factors.