The strength loss comes from the fact that not all alloys are 3d-printing friendly, so you often have to compromise and you end up with a less than ideal alloy for your application.
3D printed parts are chock-full of these microscopic flaws, porosity, and have horrible surface roughness (most parts you see in production are post-machined to improve the finish). Additionally, the repeated heating-cooling of the layers as they are deposited builds up residual stress in the part. All just due to the nature of how they are manufactured.
Re: surface roughness, I can understand that the powder grain size creates a sort of minimal structure size, and can in principle be the start of a crack if a surface grain gets knocked loose. Is that the sort of thing you mean? I can see that for any internal or external surfaces, and a rocket engine combustion is certainly applying a lot of heat and pressure on surface grains. Can this be alleviated by smaller grain sizes, or is there some limit there?
Re: repeated heating/cooling and internal stresses, this strikes me as just requiring standard post-printing stages like tempering to alleviate internal stresses.
Similarly, annealing a 3D-print to relieve residual stress does work, but it also will cause warping as those stresses are relieved. Again, sacrificing dimensional accuracy. Frontier AM companies have ways to compensate for all of these effects but it's a trial and error process for each part essentially.
At this point you're now stacking multiple processes on each other just to try to get to near-billet properties. Calibration Trials > Print > HIP > Anneal > Machine. The cost adds up quickly. It can be justified especially in non-fatigue-critical applications but it's no free lunch
You could have a cooling plate the work is on. But the higher temperature difference is apt to cause warping.
[Slightly related https://en.wikipedia.org/wiki/Cavitation The problem is that the bubbles are filled with vapor instead of CO2 like in sparkling water.]
I assume you can just anneal or print then recast in sand or whatever, maybe even lostwax with Al as wax, but the point is that porosity in a print itself is inevitable with current powder based tech.
Also subtractive manufacturing requires paying to melt away a lot of metal. 3D printing saves.
I don't know all of the ways in which SpaceX is using