Autonomous just means that a system is self-controlled rather than externally controlled. It is the name used for robots when they are wholly controlled by on-board software rather than external commands or remote control.
Something like NASA's Mars rovers are considered as semi-autonomous since they do receive external instructions, but then execute those instructions autonomously without further intervention. Similarly the combination of a coding agent and the LLM it connects to would best be considered as a semi-autonomous system.
You could also have a fully autonomous robot, or just agent, powered by an LLM, where it's not taking external instructions, but rather reacting to external events in some internally proscribed way.