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Maybe what I'm saying is stupid or malinformed, but why not having the doc as a separate repo, and set it as a submodule to the repo where the code lives? Agent should be able to push code to the submodule independently from the code, and it should not be problematic for the main repository

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I think this would a greatoption. Projects can start with two repos; one for code and one for docs. Then it would possible for code repo to add the docs one as submodule at anytime.

Actually I would suggest that to one of the projects that I'm currently involved in

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