For instance, I've observed dynamics like what you describe at various orgs, and what they had in common was a lack of psychological safety. If people are responding defensively to benign messages then it tends to mean they have a reason to expect hostile messages. Hostile messages are not a given.
One common way this arises: a company ostensibly offers flexible remote work, but in practice strongly prefers in-office work, and enforces this via social pressure. Remote work has a small social cost that accumulates each full day that one works remotely. These remote-oriented workers then have to periodically show up at the office primarily to ingratiate themselves to management and their peers. This is incredibly common, and might even be the default configuration for an org that permits flexible WFH.
I don't think this is intentionally malicious, BTW. It's simply what happens when you make a policy shift without considering your team culture as well so that both working styles are supported as first-class citizens.