This sounds to me like either (a) a complex race involving a CPU migration at an awkward time or (b) a bug in the zap path transiently exposing wrong PTEs.
Also, I don’t think the zero page has pfn zero.
If I had to throw a dart, I would guess that direct page table zapping is allowing a CPU to read through a higher-level-paging-structure cached entry to a table that has been freed and reused. Yuck. I’ve debugged one of these before.