here's a more detailed explanation: the "old" idea before this nature article was that the uranium-233 produced in thorium reactors would be inevitably mixed with uranium-232 (which isn't useful for making bombs). but the nature article pointed out that the real decay path is thorium-233 --> protactinium-233 --> (uranium-232 AND uranium-233), and that by separating the protactinium-233 from the thorium reactor's neutron flux after 1 month, you can ensure that the protactinium-233 converts to uranium-233 instead of uranium-232.[2] ... step 3 you can make a weapon.
[1] http://www.nature.com/nature/journal/v492/n7427/full/492031a... (sorry for the paywall :( ) [2] http://en.wikipedia.org/wiki/Thorium_fuel_cycle
2) I'm pretty sure there is a rare reaction that you will get protactinium-232, which has a much shorter half life the protactinium-233 (about a day instead of about a month) but it can't be chemically separated. It will decay to U-232.
The nature article is alarmist, and not practical. It would only make sense if you had a separate neutron source that was not a thorium breeder, and probably will still have a good amount of U-232. Since you have a neutron source (probably a light water reactor) why you wouldn't use the extremely well understood methods to make plutonium from U-238 is beyond me. You quite literally just need to put uranium metal in the neutron flux for 1 month and chemically separate out the plutonium. Much easier, if I was designing a nuclear weapons program I sure as hell wouldn't pick Thorium.
[1] http://en.wikipedia.org/wiki/Isotopes_of_uranium#Uranium-232
U235 & Pu239 bombs extant ... ~20,000
U233 bombs extant ... ZERO
Seems pretty conclusive. It is MUCH easier to make bombs the way everyone always has than to put your lives on the line fiddling with U233.
Also, the reactors that claim operational advantages against existing designs (particularly LFTR) are somewhat novel, which casts some doubt on their feasibility.
The operational advantages are definitely necessary for them to catch on, as this article points out, if you could get your fuel rods for free, you only save 14%.
[1] .6 delayed neutrons per 100 fissions for U233 compared to 1.6 for U235. http://www.reak.bme.hu/Wigner_Course/WignerManuals/Budapest/...
[2] Especially https://en.wikipedia.org/wiki/Liquid_fluoride_thorium_reacto...