Yeah on the mac it works fine. The keyboard just shipped with the Left Alt and Left Windows key in the correct positions, but they are mapped opposite in the firmware. Imagine how maddening it was in the beginning.
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Edit and if i switch to the macOS mode. The right alt-gr key is not mapped correctly.
I use my Keychron C3 in Windows mode because the macOS mode ain't right with the bottom left corner keys.
Maybe placement of Control/Option/Command aren't similar enough to the MacBook Pro keyboard for me.
Been meaning to figure this out and fix it... swapping physical keycaps or remapping in software or replacing the keyboard...
Hope your next buy's perfect.
https://i.imgur.com/FXkmZRV.png
Settings are per keyboard so fixing your external keyboard won't mix up any other keyboards you use (particularly for laptops).