Pharmatrak eventually won on appeal though, arguing that they had no intention of collecting personal information, which exonerated them because only intentional eavesdropping is a crime.
The company in the OP's article could make no such arguments though. I suspect that their main difference is that they make no assurances of confidentiality to the websites using their software the way Pharmatrak did. Which 1) is just really creepy, and 2) sets them up for trouble with users in California, because California's wiretapping statutes say that it's a crime unless both parties agree to it. [3]
[1] http://cyberlaw.stanford.edu/packets001737.shtml
[2] http://en.wikipedia.org/wiki/Web_bug
[3] I'm not sure if this applies to police, but it definitely does to private parties: http://www.citmedialaw.org/legal-guide/california-recording-...
Edit: Added third reference.