So many examples come to mind that it is hard to pick just one or two... consider an organization that configures access to Windows event logs (audit trails) and SMB signing requirements via GPO; will Samba 4 Domain Controllers honor that? What does it even mean to have access to modify the security auditing policy on a Samba DC without totally reimplementing the eventing system (syslog is not even close)?
In other words, AD sits on top of a ton of mature but sophisticated Windows services, the failure of any of which could be a critical problem, and make for a tough sell unless one has a pathological hatred of Microsoft yet still wishes to use AD anyway.