Ages ago there was a Russian citizen they wanted who was flying to the Caribbean. His flight had a surprise landing in Florida with the FBI waiting on the tarmac.
https://en.wikipedia.org/wiki/Ryanair_Flight_4978
Flying over a country does not make you immune to that country’s laws.
Frankly, temporary transit through a nation’s airspace (while onboard a commercial jet that you don’t control) shouldn’t subject you to their legal jurisdiction.
Shall we revoke the concept of diplomatic immunity next? Close the embassies?
We seem to be unlearning all the hard lessons of the past. It’s not going to end well.