>Recently it's been shown that there are real, physical processes which are undecidable
I want to push back a bit on this claim along two dimensions.
Imagine a physical Turing machine built out of atoms, gears, levers, and an electron parked on the read/write head and ask whether that electron ever crosses some fixed plane in space, which it does only when the machine enters its halt configuration. That's now a purely physical question about a trajectory (does this electron ever reach a certain target), yet answering it for the whole family of such machines is literally the halting problem, so there's a physical process that's undecidable.
Your examples about physical processes being undecidable are all basically just this... there examples of using reflections of light, or the flow of liquid, etc... and demonstrating that these physical processes in principle are sufficient to model a universal Turing machine.
And while it's fascinating that certain things you may not have expected can be used to model computation, it's misleading, or rather it's too strong of a claim to believe that there exist actual/real physical processes whose outcomes are undecidable. That's a subtle but very common misinterpretation of what undecidability is.
Undecidability, whether in physics or computer science, only applies to the infinitely broad class of a problem as a whole, it never applies to a specific instance of a problem. So it can never be the case that there's a certain configuration of reflections for which it's undecidable whether a ray of light reaches a target. Nor can it be the case that for a specific lattice of atoms, it's undecidable whether it has a spectral gap or not. It can only be the case that for the problem as a whole where the parameter space is entirely unbounded, there is no single algorithm that can decide if a ray of light reaches a specific target for all possible arbitrary (and infinitely many) configurations. Once you fix a specific system, then the undecidability goes away.
Not claiming that you are necessarily making this misconception, but I often see people misinterpret undecidability to mean that there exists a specific problem, like with specific inputs, where it's somehow impossible to know what the answer will be. Undecidability always requires an infinite family of instances, and it's a statement about the nonexistence of a single algorithm that correctly answers every instance in that family. It says nothing about any particular instance being unknowable/undecidable.