Would you trust clean repos that are messed up by AI?
I'm not a huge fan of their methodology for the AI-degraded cases either (ideally one would set up the mirror pairs by taking some real repositories and rewinding history a month or so and then having a succession of independent agents reimplement each bit of feature work and bugfixes over that period of time), but it's at least a coarse approximation whereas I just don't trust the cleanup methodology to resemble anything real in the first place.
In fact, there are some papers (that we cited) which create a set of tasks doing exactly this, and it is non-trivial [1].