I see this text as more open ended than a warning. It's a description of a possible future for us to contemplate. Does it have good points does it have bad points? Being satire, the protagonist is a strawman of course, but doesn't she also have some good points? It's not easy to tell where exactly the author stands where, the true argument stops and the satire begins. That's not necessarily a flaw because it doesn't actually really matter where the author stands for our ability to discuss the subject.

Scientist as prompter? Yes it seems fairly likely. But to what extent and how quickly will it happen? Surely scientists will still be able to at least give an outline of "their" work even in the future? Maybe?

Otherwise maybe we it will be a sort of inversion of control, where the language model is the supervisor, and the humans in the loop are more like research assistants doing the dirty work? Instead of a human wearing an exoskeleton, an AI wearing a biological exoskeleton? But this can only be a temporary state of affairs as we won't be needed for that forever.

A scientific project without human involvement? If a paper is published in a journal and no human wrote it and no human read it, is it really science? Does it really advance knowledge. Probably?