Unfortunately, epub and epubcheck isn't the great uncontroversial resource the author makes it out to be. When W3C, Inc. took over maintenance of the EPub spec around when 3.1 was current, they just referenced WHATWG HTML and other ever-expanding browser specs ([1]). Being "living standards", these have no versioning or QA. As a consequence of being based on a version of HTML that redefined headers and sectioning, Epub 3.2 just made existing epubs non-conforming. Which is why Calibre and other tool still recommend 3.1 or better yet 2.
The case mentioned where the CSS min() function is rejected is another place where bulk import of the extremely complex CSS spec is just not helpful. Ebook readers aren't evergreen browsers after all.