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I can't speak for Gnome, but KDE makes it pretty easy to create rules that apply automatically to any new window that meets whatever arbitrary criteria you set.

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That's terrible. That's an "unbreak my software" preference. User's shouldn't have to mess with that; things should just work in ways they expect, out of the box.

I disagree. With how KDE handles this, I'm not at the mercy of the software vendor's whims on what windows stay on top and which ones don't. I have complete control through a standardized interface that can even be automated if I wish.

Does it require a little more knowledge on the part of the user? Yes, but it's worth it because with that knowledge comes power.

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