This is like a 1D version of what a scientific computing person might describe as the distinction between node-centered ("standard" or "mid-tread" in this post) vs cell-centered ("alternative", "mid-riser") samples: do consider values to be at the middles of bins (or middles of triangles, or middle of tetrahedra), or the boundaries between intervals (or vertices of triangles, or of tets).

In a scientific computing setting it would be insane to start doing data processing without knowing how to interpret the values. In the context of audio signal processing, if you just get a stream of integers, you'd have to know the representational intent of those integers (mu-law encoding or linear?) if you're going to compute anything about the underlying signal. The meta-data accompanying the values would hopefully provide the answer.

But with 8-bit pixel values, absent any meta-data from a competent file format that can communicate the representational intent, we're adrift and there's no right answer (like the author says). Certainly no one can fault you for picking whichever one seems to be give better results for your application, but you can raise awareness that bits without context have had their meaning undermined.