The problem with this fragmentation of rsync is that Apple and Android will prefer it, but the Linux and greater GPL world will adhere to the original implantation due to inertia. Power users will just have to know the quirks of each version.
The only way to stop this is for the original author(s) to release this under a BSD license.
Edit: For those assuming equivalent/identical behavior, study these words carefully: "accepts only a subset of rsync's command-line arguments."