I don’t know like chess engines didn’t kill chess. You could just play with people that don’t use the “engine”
For me it feels like this is not really possible for live CTFs. In contrast to chess you can't ban AI, as live CTFs are about breaking things by design, so they'll always try to circumvent an AI ban.
Impossible to do online, at least. People go beyond things for virtual fame and "owning" others. Even if it is based on cheating.