I still prefer this over having a Microsoft developer account and publishing in the store--I hate having to put my software through arbitrary store review processes--but it's not a good situation. SmartScreen is just about the worst thing ever to happen to indie developers on Windows. We're right there in the thick of it with macOS developers: different details, same struggle. Both of our corporate overlords want you to distribute software in their store, and you get the sense that they would end self-distribution entirely if they thought they could get away with it.
I note that TFA's author edited the post after-the-fact, changing the line about Windows. It originally claimed that Windows worked fine and they got "just an EXE" and that was that. I assume they finally tried it for real on a civilian computer and saw the SmartScreen block.