PCIe also had things like "1.1", "2.1" and "3.1" - that fixed issues and added functionality - but there wasn't the same crossover between "feature sets and spec revisions" and "speeds" we see in USB today.
But USB 3.0 is pretty much the only "speed" that hasn't changed - it always required the extra connectors for 5Gbps from the start - but no more. What about those ports is now not "3.0"?