I let it troubleshoot my web code using a temporary JWT in a dev environment using headless chrome and Puppeteer in a Docker container.
Everything else is in AWS Secrets Manager inaccessible by the IAM role the agent has access to.
I don’t store the temporary AWS keys in a file anywhere. They are in environment variables. All AWS SDKs and the CLI look in the environment variables by default.
I sure as hell don’t store API keys anywhere on my local computer.