Here is a Match where Nakamura played with Rybka against Stockfish from 2014: https://www.chess.com/news/view/stockfish-outlasts-nakamura-...

And here Nakamura still reached 4.5:3.5 vs Komodo in 2016 https://www.chess.com/news/view/komodo-beats-nakamura-in-fin...

Hikaru surely has more matches like that, but I don't know if they can be found in chess databases or if they were only streamed on YouTube.