Things that are subject to a lot of wear and tear and handled a lot will not work well with dots as they will come off, but I don't find that to be a problem for the front of storage boxes so it works for me.
While I don't have an electronic system for tracking parts bins, the one exception is parts I place on PBCs. This is a small subset of my total parts and to track them I have an electronic database that's much more rigorous, tracking part numbers, data sheets, footprints, symbols, and it is much closer to the kind of part database that a site like digikey would use than the dot system.
I don't need dots to track parts I put on PCBs because I can do that all programmatically to scan the files and see what parts I place the most often.
I don't quite know what you mean with your question about whether it would be useful if I didn't have dot totals but still tracked them. I do find the dot totals to be useful, and comparing across years also helps me identify things that were used a lot, but maybe only two years ago. Stuff like glue and magnets seem timeless and are used constantly every year though.