There are a number of people who have worked to abolish grades over the years, so I don't think your direct action point makes much sense. Additionally, this seems like the sort of issue that, simply due to inertia, won't be changed without some sort of revolution.
Again, I'd argue that he's not diminishing the prospects of other students (assuming most other graders grade "normally"), simply because other grades will balance them out. One A+ isn't going to make or break an interview. Besides, this sort of thing happens constantly anyways, simply due to the fact that different graders grade differently.
I think your last point comes down to a moral value judgment. You say that he doesn't have the right to try to fix the system on his own; I'd say that he has not only the right but the responsibility. I think this especially makes sense when you consider that, if grading is as flawed as I say it is, using grades to judge is discrimination (and I mean it in the pejorative sense).
Think of it like racism. If there really is an intelligence gap between different races, and you are supposed to label peoples' races so that employers could judge them, then my moral intuition would line up with yours; it would be wrong for you to label everyone as white (or whatever the best race was supposed to be) just because you believed that race was a good indicator of intelligence.
But if race isn't an accurate indicator of intelligence, but people were using it as a measurement of intelligence anyways, then my moral intuition says that you would have a responsibility to do everything you could to fight against racism, which could include labeling everyone as white.
Actually, it seems a rather sticky point.