The title seems pretty click-bait. If you read the article the argument isn't that vaccines don't work or that not vaccinating may increase disease and deaths. It's that our personal freedoms should still win. The example the Dr. gives with alcoholism seems quite relevant, many more people have negative health outcomes due to alcohol consumption:
"Alcohol is a leading cause of morbidity and mortality, with harms related to both acute and chronic effects of alcohol contributing to about 4.3 million emergency department visits and more than 178,000 deaths in the U.S. each year."
https://www.niaaa.nih.gov/health-professionals-communities/c...
Should we ban alcohol?
While it's true that there are different externalities here (e.g. you're increasing other people's risk by not vaccinating and losing the herd effect) there are also externalities to alcohol consumption (e.g. drunken drivers).
The question is where does that line go between freedom and health factors and other externalities. We should be able to have this discussion without political tribalism.