I don't really get how the workflow is supposed to work, but I think it's mostly due to how the tool is made. It has like some sort of "change stack" similar to git commits/staging but which keeps conflicting with anything I manually edit.
Perhaps it's just this particular implementation (Copilot integration in VS) which is bad, and others are better? I have extreme trouble trying to feed it context, handling suggested AI changes without completely corrupting the code for even small changes.