Personally, my recommendation in most cases would be "maintain a strict list of common elements/attributes to allow in the serialized form, and don't put anything weird in that list: if a serialize-parse roundtrip has the remote possibility of breaking something, then you're allowing too much". Also, "if you want to mutate something, then do it in the object tree, not in the serialized version".
[0] https://www.sonarsource.com/blog/mxss-the-vulnerability-hidi...