You can prepare CSRs with new public keys years in advance. It'll take some certbot/ACME scripting to use them instead of aurogenerating new ones on the fly, but that way you can pin your future certificates. Add pins as you prepare new CSRs and drop them as the certificates expire, and depending on the size of the list you choose you should be good for months or years without app updates.

Plus, if you do any key pinning, you'd probably do well to also pin a backup public key you haven't used in case your CA/infra collapses and you quickly need to redo your HTTPS setup.