I don't see any advantage working on JupyterGIS over working in QGIS.
Your actions are repeatable and can be stored in a centralized repository.
There are probably some macro abilities in QGIS (it is an amazing tool), but this means moving to "script first" from "click first".
(but you can always just use proj/GDAL at the import/export layer...)
A python notebook would be a nice way of generating reports of GIS data in an interactive way without being forced to use pages, PDFs, and embedded image files.
If the working environment allows for checking/reviewing within the notebook, I guess this could help automatise things.