The point (I think) that TLA is trying to make is that encryption isn’t enough. It wouldn’t be a good situation where someone looks at their house burning and says “well at least nobody could ever read my https traffic.”
The browser not trusting the CA that signed the certificate prevents this. As the commenter said above, they would first need to install a certificate into your list of trusted certs for this to work. Your IT department can do that because they have root on your machine, vpn-du-jour.com can not, and neither can anybody else without root.
Also, I believe that when I download “Shoot Your Friends Online” and install that, it also asks for root privileges (in order to make sure that no cheating software runs on my computer that would allow me to “shoot more of my friends quicker.”)
I also think that when I install “Freecell Advanced,” it also comes with “Freecell Advanced Updater” that needs root privileges (in order to “update Freecell Advanced.”)
Do I understand correctly that there is nothing stopping all three of these — running with root privileges — from installing certificates?
It's fine to still run the software if you trust it, though.