The arrival of Zionist European Jews was a phenomonen of the 19th and 20th centuries.
The Zionist Jews that came from Europe brought with them a supremecist ideology that, in their eyes, justified all forms of violence committed against the Muslim, Christian, and yes, Jewish Palestians that opposed their colonization.
I don't know what you're making or misrepresenting in your statememt about Jordan and Jerusalem, but Jews have always lived in Jerusalem since the Muslims first took control of it 1400 years ago when Umar ibn El-Khattab brought back in Jews who had been expelled by the Christian rulers prior to that.
Jews have always prospered under actual religious Muslim rule, whether in Palestine, Spain, Morocco, Iran, or otherwise. Zionism is what drove a rift between Muslims and Jews in past two centuries, as prior to this there never was one.