I think this is your "intuition" because it is what you are used to, I see no reason why this would be the objectively correct way to do things. The legislative procedure in the EU is a bit more complex than laws simply flowing "up" or "down". There is a trilogue, which is effectively a three-way negotiation between the Council, Parliament and Commission. But ultimately the approval of Parliament and in most cases the Council is required (ie, Commission cannot force laws).

The EU system is also not without its flaws but it's not the worst. Enacting broad, sweeping legislation is cumbersome and difficult which is a feature, not a bug. If we had a more streamlined system we'd probably already have chat control by now.