I may be remembering stuff wrong, but wasn't there more tension + conflict during the period right after the acquisition? Didn't Reddit struggle to pay for basic infrastructure stuff due to their new parent company's skepticism about its viability and perception of its value?
http://blog.reddit.com/2010/07/reddit-needs-help.html
And it was a long while until it got spun out. (http://venturebeat.com/2011/09/06/reddit-break-conde-nast/)
Not that there's anything crazy in any of this. Just that the NYT story paints it like right away they 1) knew Reddit's worth and 2) knew to have a hands-off approach.
I'm far from a Reddit power user, happy to hear other perspectives.