Vinay Prasad, the new FDA chief medical and scientific director, is an extremely sensible guy and a co-author of a great 2013 book on evidence-based medicine targeting the lay audience (Ending Medical Reversal)
Here's an EconTalk podcast with the other co-author, Adam Cifu, talking about the book. https://www.econtalk.org/adam-cifu-on-ending-medical-reversa...
The NYT article presents his COVID vaccine policy changes as yet more crazy MAGA shit, whereas in fact he holds nuanced views, based on up-to-date review of available evidence. He has published in NEJM and elsewhere on the topic:
https://www.nejm.org/doi/full/10.1056/NEJMsb2506929
A short take on the above from Adam Cifu, whom I respect greatly: https://www.sensible-med.com/p/prasad-makary-and-an-evidence...
With all of that, I suspect that the rumours of FDA's death are greatly exaggerated.