All the time. Many CA distrust events involved some degree of “amateurs” reporting issues. While I hesitate to call commenters like agwa an amateur, it certainly was not professionally sponsored work by root programs or CAs. This is a key thing that Certificate Transparency enables: amateurs, academics, and the public at large to report CA issues.

At the same time, it sounds like the issues you describe aren’t CA/issuance issues, but rather, simple misconfigurations. Those aren’t incidents for the ecosystem, although definitely can be disruptive to the site, but I also wouldn’t expect them to call trust or identity into disrepute. That’d be like arguing my drivers license is invalid if I handed you my passport; giving you the wrong doc doesn’t invalidate the claims of either, just doesn’t address your need.