"The system was set up to foster innovation, not grant free monopolies willy nilly. I've yet to read any convincing argument about how this verdict will lead to more innovation, but there's a very clear way to see how it could lead to less."The patent system does not grant patents "willy nilly". Whether you agree with the outcome or not, there is a (rather lengthy) review process, and it was followed. And if the verdict is consistent with the patent laws, then your objection to the case is irrelevant -- your proper complaint is with the system, not the actor.
"I find it very hard to believe that had Apple not been granted these patents, or if the patents had a much more appropriate 12-18month validity period, they would not have shipped the iPhone and forgone the massive revenue and profit stream."
Again, you have complaints about the patent system, and I empathize. I don't like many aspects of the system, either. But I also don't begrudge Apple for acting rationally within the rules established by the system.
In this case, in particular, I believe that the patent system is being used in a legitimate way, to protect a company that has made some true marketplace innovations. It's decidedly sub-optimal that Apple has to resort to patents on rubber-band scrolling to protect something as core to their business model as "look and feel", but that's the system that we have. I don't think it's fair to make Apple a villain (and Samsung a hero) just because the laws are flawed.
Said another way: don't hate the player, hate the game.