In his myths he has no problem actively interfering with man. The great flood story itself is a giant logical paradox.
God is perfect. God is all knowing.
Yet God creates a world so screwed up he has to reset it.
What free will does every human who's not Noah have ?
Revalations heavily implies that one day God will get sick of this. Too much free will or something.
Honestly everyone has a right to whatever myths get them through the day. The issue becomes when your myth infringe on the rights of others or are used to persecute. As in, your magic book has a few dietary restrictions, cool.
Your magic book calls certain people abominations, or suggest they should have less rights, not cool.